STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3765PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sse:Ssed_0818 succinylglutamate desuccinylase/aspartoacylase. (368 aa)    
Predicted Functional Partners:
Swoo_2165
KEGG: sse:Ssed_2440 hypothetical protein.
  
     0.656
Swoo_3764
KEGG: sse:Ssed_0817 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; Belongs to the aspartokinase family.
 
   
 0.631
Swoo_1308
PFAM: protein of unknown function DUF81; KEGG: shn:Shewana3_3118 protein of unknown function DUF81.
  
     0.591
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
     0.549
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.544
Swoo_3766
KEGG: she:Shewmr4_3142 hypothetical protein.
       0.532
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.525
Swoo_1746
PFAM: Dual specificity protein phosphatase; KEGG: sse:Ssed_2901 dual specificity protein phosphatase.
  
     0.524
Swoo_0247
KEGG: sse:Ssed_0248 hypothetical protein.
  
     0.516
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
     0.513
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.