Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3768Protease-associated PA domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; peptidase domain protein; KEGG: shm:Shewmr7_0825 protease-associated PA domain protein; Belongs to the peptidase S8 family. (1265 aa)    
Predicted Functional Partners:
Swoo_3431
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: sse:Ssed_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
   
 0.658
Swoo_3041
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sse:Ssed_1611 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
   
 0.623
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.489
Swoo_2388
KEGG: sse:Ssed_2236 GCN5-related N-acetyltransferase.
  
     0.473
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.461
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.445
Swoo_1168
KEGG: sse:Ssed_1086 general secretion pathway protein B.
  
    0.433
Swoo_2165
KEGG: sse:Ssed_2440 hypothetical protein.
  
     0.433
Swoo_0766
KEGG: sse:Ssed_2789 hypothetical protein.
  
     0.413
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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