STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3769PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sse:Ssed_0814 peptidase S9B, dipeptidylpeptidase IV domain protein. (768 aa)    
Predicted Functional Partners:
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
    0.653
Swoo_1126
Peptidase S15; KEGG: spl:Spea_2277 peptidase S15.
  
     0.606
Swoo_3877
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.565
Swoo_4208
KEGG: sse:Ssed_0761 hypothetical protein.
  
     0.565
Swoo_4754
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_4365 conserved hypothetical carboxypeptidase.
 
     0.535
Swoo_1286
PFAM: peptidase M20; peptidase M28; KEGG: sse:Ssed_1189 peptidase M28.
  
    0.530
Swoo_3448
PFAM: Peptidase M1 membrane alanine aminopeptidase; Leukotriene A4 hydrolase; KEGG: sse:Ssed_3299 peptidase M1, membrane alanine aminopeptidase.
  
     0.507
Swoo_2544
PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: sse:Ssed_2057 peptidyl-dipeptidase A.
 
     0.471
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
     0.469
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.462
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.