STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3774KEGG: spl:Spea_0724 conserved hypothetical protein. (358 aa)    
Predicted Functional Partners:
Swoo_1555
KEGG: mbn:Mboo_1713 hypothetical protein.
  
     0.464
Swoo_2747
PFAM: peptidase M28; KEGG: sse:Ssed_1839 peptidase M28.
  
     0.449
Swoo_2437
PFAM: LytTr DNA-binding region; KEGG: pat:Patl_2385 response regulator receiver protein.
  
     0.438
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
  
     0.431
Swoo_1426
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3760 TonB-dependent receptor.
  
     0.405
Swoo_1286
PFAM: peptidase M20; peptidase M28; KEGG: sse:Ssed_1189 peptidase M28.
  
     0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.