Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_3784KEGG: sse:Ssed_3885 hypothetical protein. (1224 aa)    
Predicted Functional Partners:
Swoo_3783
KEGG: sse:Ssed_3884 hypothetical protein.
 
    0.965
Swoo_3782
KEGG: sse:Ssed_3883 hypothetical protein.
 
     0.960
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
   
 
 0.868
Swoo_2909
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.780
Swoo_3759
KEGG: sse:Ssed_3593 hypothetical protein.
 
     0.657
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.647
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.636
Swoo_2606
KEGG: sse:Ssed_1994 hypothetical protein.
 
     0.597
Swoo_3159
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: sse:Ssed_1510 3-oxoacyl-(acyl-carrier-protein (ACP)) synthase III C terminal domain protein.
     
 0.582
Swoo_1572
KEGG: sse:Ssed_3110 hypothetical protein.
  
     0.579
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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