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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3785TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sse:Ssed_3886 amino acid carrier protein. (457 aa)    
Predicted Functional Partners:
rdgC
Putative exonuclease RdgC; May be involved in recombination; Belongs to the RdgC family.
   
    0.467
Swoo_3036
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.440
Swoo_1201
PFAM: Chloride channel core; KEGG: sse:Ssed_1093 Cl-channel, voltage-gated family protein.
   
    0.426
Swoo_3784
KEGG: sse:Ssed_3885 hypothetical protein.
       0.414
Swoo_3782
KEGG: sse:Ssed_3883 hypothetical protein.
       0.401
Swoo_3783
KEGG: sse:Ssed_3884 hypothetical protein.
       0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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