STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3786KEGG: sse:Ssed_3887 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.499
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.480
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.474
Swoo_3787
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_0713 TonB-dependent receptor.
       0.474
Swoo_1080
KEGG: sse:Ssed_1018 hypothetical protein.
  
     0.431
Swoo_2753
KEGG: sse:Ssed_1835 hypothetical protein.
  
     0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.