Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3788PFAM: phosphate-selective porin O and P; KEGG: sse:Ssed_3889 phosphate-selective porin O and P. (395 aa)    
Predicted Functional Partners:
Swoo_3789
KEGG: sse:Ssed_3890 FMN-binding domain protein.
 
     0.905
Swoo_3790
PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_3891 PepSY-associated TM helix domain protein.
 
    0.873
Swoo_3303
KEGG: sse:Ssed_3185 hypothetical protein.
  
 
   0.693
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.434
Swoo_0665
PFAM: outer membrane efflux protein; KEGG: sse:Ssed_3870 Co/Zn/Cd efflux system component.
  
     0.419
Swoo_3787
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_0713 TonB-dependent receptor.
       0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.