Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3790PFAM: PepSY-associated TM helix domain protein; KEGG: sse:Ssed_3891 PepSY-associated TM helix domain protein. (265 aa)    
Predicted Functional Partners:
Swoo_3789
KEGG: sse:Ssed_3890 FMN-binding domain protein.
 
     0.909
Swoo_3788
PFAM: phosphate-selective porin O and P; KEGG: sse:Ssed_3889 phosphate-selective porin O and P.
 
    0.873
Swoo_3303
KEGG: sse:Ssed_3185 hypothetical protein.
  
     0.608
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.543
Swoo_0790
KEGG: sse:Ssed_3793 hypothetical protein.
 
    0.497
Swoo_2937
KEGG: cps:CPS_3046 hypothetical protein.
 
    0.474
Swoo_2993
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_0485 TonB-dependent receptor.
  
     0.447
Swoo_1699
PFAM: polysaccharide export protein; KEGG: sse:Ssed_2946 polysaccharide export protein.
  
     0.442
Swoo_3791
PFAM: major facilitator superfamily MFS_1; KEGG: spl:Spea_0707 major facilitator superfamily MFS_1.
       0.427
Swoo_1653
PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein.
  
     0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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