Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3828PFAM: Disulphide bond formation protein DsbB; KEGG: spl:Spea_3914 disulphide bond formation protein DsbB. (482 aa)    
Predicted Functional Partners:
Swoo_4141
PFAM: protein of unknown function DUF342; KEGG: sse:Ssed_3979 protein of unknown function DUF342.
   
    0.492
Swoo_3827
Hypothetical protein; Programmed frameshift; KEGG: spl:Spea_3706 transposase.
       0.471
Swoo_4451
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0508 polysulphide reductase NrfD.
  
     0.453
Swoo_0400
PFAM: DSBA oxidoreductase; KEGG: sse:Ssed_4193 DsbA oxidoreductase.
  
 
 0.446
Swoo_0426
Protein-disulfide isomerase-like protein; KEGG: mgm:Mmc1_0444 DsbA oxidoreductase.
  
 
 0.446
Swoo_0896
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
 
 0.446
Swoo_3004
PFAM: DSBA oxidoreductase; KEGG: shw:Sputw3181_3957 DsbA oxidoreductase.
  
 
 0.446
Swoo_2094
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_3174 protein of unknown function DUF6, transmembrane.
   
    0.440
Swoo_2233
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sse:Ssed_3775 protein of unknown function DUF6, transmembrane.
   
    0.440
Swoo_4472
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD.
  
     0.438
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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