Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3849KEGG: pvi:Cvib_0160 periplasmic protein. (375 aa)    
Predicted Functional Partners:
Swoo_0642
KEGG: shn:Shewana3_3254 curli production assembly/transport component CsgF, putative.
  
 
 0.866
Swoo_0641
KEGG: shm:Shewmr7_3154 curli production assembly/transport component CsgE, putative.
  
 
 0.854
Swoo_3850
KEGG: dps:DP0589 hypothetical protein.
       0.824
Swoo_3851
TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: pvi:Cvib_0158 membrane lipoprotein lipid attachment site.
     
 0.626
Swoo_3852
KEGG: dps:DP0586 hypothetical protein.
     
 0.623
Swoo_1591
PFAM: protein of unknown function DUF400; KEGG: sse:Ssed_3093 protein of unknown function DUF400.
   
 
 0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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