Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_3867PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vpa:VP2167 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Swoo_2308
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: sse:Ssed_2301 aspartate transaminase.
   
    0.817
Swoo_2453
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sfr:Sfri_1406 antibiotic biosynthesis monooxygenase.
  
     0.625
Swoo_3868
KEGG: vfi:VF1213 hypothetical protein.
       0.489
Swoo_0925
KEGG: sse:Ssed_0827 hypothetical protein.
  
     0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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