Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
Swoo_3877Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (718 aa)    
Predicted Functional Partners:
Swoo_2228
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_2357 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.694
Swoo_3769
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sse:Ssed_0814 peptidase S9B, dipeptidylpeptidase IV domain protein.
  
     0.565
Swoo_4490
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_3412 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.520
Swoo_2108
KEGG: spl:Spea_2450 conserved hypothetical protein.
  
    0.511
Swoo_3767
PFAM: protease-associated PA domain protein; KEGG: shn:Shewana3_0797 protease-associated PA domain protein.
  
     0.486
Swoo_2598
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_2005 major facilitator superfamily MFS_1.
  
     0.467
Swoo_4068
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase.
  
     0.460
Swoo_2565
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2036 TonB-dependent receptor.
  
     0.458
Swoo_0671
KEGG: sse:Ssed_3864 hypothetical protein.
  
     0.429
Swoo_3878
PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_3938 aromatic amino acid permease.
       0.425
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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