Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3891Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family. (1079 aa)    
Predicted Functional Partners:
Swoo_3465
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_3317 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.666
Swoo_4490
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_3412 peptidase S9, prolyl oligopeptidase active site domain protein.
  
    0.597
Swoo_3243
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sfr:Sfri_2817 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.565
Swoo_0393
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: spl:Spea_0284 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.549
Swoo_2940
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_1672 hypothetical protein.
  
     0.549
Swoo_1208
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: spl:Spea_0990 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.521
Swoo_1900
KEGG: sse:Ssed_2739 multidrug resistance efflux pump-like protein.
  
     0.477
Swoo_2664
Putative PAS/PAC sensor protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: PAS domain containing protein; Tetratricopeptide domain protein; KEGG: sfr:Sfri_0071 TPR repeat-containing protein.
  
 
   0.462
Swoo_1740
Conserved carboxylase region; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: pat:Patl_3012 oxaloacetate decarboxylase alpha subunit.
  
    0.449
Swoo_3336
KEGG: sse:Ssed_1321 oxaloacetate decarboxylase; TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region.
  
    0.449
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.