Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3899KEGG: sde:Sde_3050 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
  
     0.610
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
  
     0.582
Swoo_3898
Hypothetical protein.
       0.578
Swoo_0028
KEGG: hch:HCH_00711 hypothetical protein.
  
     0.530
Swoo_0742
KEGG: slo:Shew_0638 cell surface receptor IPT/TIG domain protein.
  
     0.488
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
  
     0.445
Swoo_3176
PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1098 alpha/beta hydrolase fold.
  
     0.429
Swoo_4272
KEGG: pat:Patl_3535 uncharacterized membrane-anchored protein-like.
  
     0.416
Swoo_3897
Hypothetical protein.
       0.411
Swoo_3431
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: sse:Ssed_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
     0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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