STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3901SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase. (109 aa)    
Predicted Functional Partners:
Swoo_3903
TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: pen:PSEEN0410 hypothetical protein.
 
     0.775
Swoo_3902
TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: pfl:PFL_2086 peptide chain release factor-like protein.
       0.685
Swoo_1192
Conserved hypothetical protein; KEGG: bld:BLi00372 similar to proteins.
  
     0.639
Swoo_0145
KEGG: sse:Ssed_0165 hypothetical protein.
  
     0.531
Swoo_3537
KEGG: fjo:Fjoh_4073 hypothetical protein.
  
     0.500
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
  
     0.481
Swoo_2503
KEGG: hch:HCH_06118 hypothetical protein.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.