STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3928PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: spl:Spea_3253 protein of unknown function DUF181. (728 aa)    
Predicted Functional Partners:
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
  
 0.598
Swoo_0947
PFAM: nitroreductase; KEGG: saz:Sama_2969 nitroreductase.
  
  
 0.595
Swoo_1122
PFAM: nitroreductase; KEGG: nmr:Nmar_1696 nitroreductase.
  
  
 0.595
Swoo_1863
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cps:CPS_2468 nitroreductase family protein.
  
  
 0.595
Swoo_1891
PFAM: nitroreductase; KEGG: sse:Ssed_2747 nitroreductase.
  
  
 0.595
Swoo_2454
PFAM: nitroreductase; KEGG: spl:Spea_2510 nitroreductase.
  
  
 0.595
Swoo_2004
PFAM: ABC-2 type transporter; KEGG: mth:MTH1092 ABC-2 type transport system permease protein.
  
  
 0.506
Swoo_2261
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein.
  
  
 0.506
Swoo_3816
PFAM: ABC-2 type transporter; KEGG: spl:Spea_0690 ABC-2 type transporter.
  
  
 0.506
Swoo_4363
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_0585 ABC-2 type transporter.
  
  
 0.506
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.