Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swoo_3935PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRA2833 putative threonine efflux protein. (203 aa)    
Predicted Functional Partners:
Swoo_3865
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sse:Ssed_3931 transporter, LysE family.
  
    0.790
Swoo_4912
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sse:Ssed_4501 lysine exporter protein (LysE/YggA).
  
    0.790
Swoo_3934
KEGG: spl:Spea_3256 conserved hypothetical protein.
       0.414
Swoo_3936
PFAM: tryptophan halogenase; KEGG: sde:Sde_1096 tryptophan halogenase, putative.
       0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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