STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3940PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pdi:BDI_2661 gluconolactonase precursor. (295 aa)    
Predicted Functional Partners:
Swoo_3000
KEGG: sse:Ssed_3543 hypothetical protein.
     
 0.902
Swoo_3941
PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: spe:Spro_0536 beta-N-acetylhexosaminidase.
     0.821
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
 
     0.521
Swoo_0366
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
  
     0.501
Swoo_1314
KEGG: sse:Ssed_1214 hypothetical protein.
  
     0.501
Swoo_1749
Oxidoreductase domain protein; Glycosidase.
 
  
 0.501
Swoo_3657
PFAM: sulfatase; KEGG: rba:RB4017 probable sulfatase.
  
  
 0.423
Swoo_2286
KEGG: spl:Spea_2842 conserved hypothetical protein.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.