Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3941PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: spe:Spro_0536 beta-N-acetylhexosaminidase. (811 aa)    
Predicted Functional Partners:
Swoo_3287
PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sse:Ssed_3167 PTS system, glucose-like IIB subunint.
  
  
 0.949
Swoo_0561
Beta-N-acetylhexosaminidase; PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: sbn:Sbal195_1432 beta-N-acetylhexosaminidase.
  
  
 
0.929
Swoo_1311
Beta-N-acetylhexosaminidase; PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: sse:Ssed_1211 beta-N-acetylhexosaminidase.
  
  
 
0.929
Swoo_1100
PFAM: PKD domain containing protein; glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Chitinase A domain protein; SMART: chitinase II; KEGG: sbl:Sbal_3083 chitinase.
  
  
  0.928
nagZ
Glycoside hydrolase family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.913
Swoo_2348
Hypothetical protein; KEGG: cvi:CV_2935 probable chitinase A.
     
 0.909
Swoo_3660
PFAM: sulfatase; KEGG: pat:Patl_1842 sulfatase.
    
  0.902
Swoo_3940
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pdi:BDI_2661 gluconolactonase precursor.
     0.821
Swoo_2190
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: sse:Ssed_2416 PTS system, glucose subfamily, IIA subunit.
  
    0.701
Swoo_0365
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3701 hypothetical protein.
  
     0.534
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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