Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3953NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sse:Ssed_3666 NADH dehydrogenase (quinone). (492 aa)    
Predicted Functional Partners:
Swoo_3951
PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sse:Ssed_3664 Na+/H+ antiporter MnhB subunit-related protein.
 
 0.999
Swoo_3952
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: spl:Spea_3283 NADH-ubiquinone oxidoreductase chain 4L.
 
 
 0.997
Swoo_3948
PFAM: cation antiporter; KEGG: sse:Ssed_3661 cation antiporter.
 
 
 0.995
Swoo_3950
TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: sse:Ssed_3663 multisubunit Na+/H+ antiporter MnhG subunit-like protein.
 
 
 0.993
Swoo_3956
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: spl:Spea_3287 NADH dehydrogenase (quinone).
 
  
0.993
Swoo_3949
PFAM: multiple resistance and pH regulation protein F; KEGG: spl:Spea_3280 multiple resistance and pH regulation protein F.
 
 
 0.991
Swoo_3954
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sse:Ssed_3667 NADH dehydrogenase (quinone).
 
 
0.982
Swoo_3955
KEGG: spl:Spea_3286 hypothetical protein.
 
    0.954
Swoo_2870
KEGG: mca:MCA1349 NADH dehydrogenase I, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I).
 
 
0.909
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.879
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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