Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_3955KEGG: spl:Spea_3286 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Swoo_3951
PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sse:Ssed_3664 Na+/H+ antiporter MnhB subunit-related protein.
 
     0.961
Swoo_3956
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: spl:Spea_3287 NADH dehydrogenase (quinone).
 
    0.958
Swoo_3953
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sse:Ssed_3666 NADH dehydrogenase (quinone).
 
    0.954
Swoo_3952
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: spl:Spea_3283 NADH-ubiquinone oxidoreductase chain 4L.
 
     0.952
Swoo_3954
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sse:Ssed_3667 NADH dehydrogenase (quinone).
 
    0.950
Swoo_3948
PFAM: cation antiporter; KEGG: sse:Ssed_3661 cation antiporter.
 
     0.939
Swoo_3949
PFAM: multiple resistance and pH regulation protein F; KEGG: spl:Spea_3280 multiple resistance and pH regulation protein F.
 
     0.939
Swoo_3950
TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: sse:Ssed_3663 multisubunit Na+/H+ antiporter MnhG subunit-like protein.
 
    0.914
Swoo_3947
KEGG: spl:Spea_3278 hypothetical protein.
       0.501
Swoo_0683
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_3859 hypothetical protein.
  
     0.478
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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