Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_3975PFAM: MltA-interacting MipA family protein; KEGG: sbl:Sbal_0752 MltA-interacting MipA family protein. (257 aa)    
Predicted Functional Partners:
Swoo_3976
KEGG: sbn:Sbal195_3688 hypothetical protein.
  
    0.785
Swoo_2371
KEGG: vpa:VPA0447 hypothetical protein.
  
     0.679
Swoo_1054
KEGG: spl:Spea_0899 conserved hypothetical protein.
  
     0.661
Swoo_0564
PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein.
  
     0.589
Swoo_1918
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_1247 transcriptional regulator, AraC family.
  
     0.535
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
  
     0.439
Swoo_3393
Putative transcriptional regulator, Crp/Fnr family; KEGG: sse:Ssed_3250 cyclic nucleotide-binding protein.
  
    0.438
Swoo_4856
KEGG: sse:Ssed_4455 hypothetical protein.
  
     0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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