Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4004TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_3327 TonB-dependent heme/hemoglobin receptor family protein. (681 aa)    
Predicted Functional Partners:
Swoo_4002
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: spl:Spea_3325 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
 
  
 0.957
Swoo_4008
PFAM: periplasmic binding protein; KEGG: spl:Spea_3331 periplasmic binding protein.
 
  
 0.832
Swoo_4003
PFAM: protein of unknown function DUF1008; KEGG: spl:Spea_3326 protein of unknown function DUF1008.
 
  
 0.788
Swoo_4005
TIGRFAM: TonB family protein; KEGG: spl:Spea_3328 TonB family protein.
 
 
 0.785
Swoo_4009
PFAM: transport system permease protein; KEGG: spl:Spea_3332 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.689
Swoo_4006
PFAM: MotA/TolQ/ExbB proton channel; KEGG: spl:Spea_3329 MotA/TolQ/ExbB proton channel.
 
  
 0.677
Swoo_4007
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spl:Spea_3330 biopolymer transport protein ExbD/TolR.
 
    0.630
Swoo_4010
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_3333 ABC transporter related.
 
  
 0.609
Swoo_4894
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_4483 TonB-dependent siderophore receptor.
  
  
 0.554
Swoo_0661
KEGG: sse:Ssed_3874 hypothetical protein.
  
     0.497
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.