Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4007PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spl:Spea_3330 biopolymer transport protein ExbD/TolR. (137 aa)    
Predicted Functional Partners:
Swoo_4006
PFAM: MotA/TolQ/ExbB proton channel; KEGG: spl:Spea_3329 MotA/TolQ/ExbB proton channel.
 
 
 0.993
Swoo_4005
TIGRFAM: TonB family protein; KEGG: spl:Spea_3328 TonB family protein.
 
 
 0.931
Swoo_4003
PFAM: protein of unknown function DUF1008; KEGG: spl:Spea_3326 protein of unknown function DUF1008.
 
  
 0.894
Swoo_3077
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2476 MotA/TolQ/ExbB proton channel.
  
 
 0.886
Swoo_4008
PFAM: periplasmic binding protein; KEGG: spl:Spea_3331 periplasmic binding protein.
 
  
 0.815
Swoo_3078
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2477 MotA/TolQ/ExbB proton channel.
  
 
 0.812
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.766
Swoo_3481
TIGRFAM: TonB family protein; KEGG: sse:Ssed_3332 TonB family protein.
  
 
 0.746
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.741
Swoo_3550
PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative.
  
     0.735
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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