Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4015KEGG: ppr:PBPRA0857 hypothetical protein. (112 aa)    
Predicted Functional Partners:
Swoo_3870
KEGG: sse:Ssed_3933 hypothetical protein.
  
     0.537
Swoo_4016
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit.
       0.509
Swoo_4017
KEGG: sfr:Sfri_3419 hypothetical protein.
       0.509
Swoo_3907
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein.
  
     0.469
Swoo_1574
KEGG: sse:Ssed_3108 hypothetical protein.
  
     0.448
Swoo_1503
PFAM: regulatory protein MarR; KEGG: saz:Sama_2690 transcriptional regulator, MarR family.
  
     0.442
Swoo_3291
KEGG: sse:Ssed_3171 hypothetical protein.
  
     0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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