Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4018Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein. (68 aa)    
Predicted Functional Partners:
Swoo_3436
PFAM: protein of unknown function DUF437; KEGG: vpa:VPA1414 hypothetical protein; Belongs to the UPF0267 family.
  
    0.755
Swoo_4016
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit.
 
    0.714
Swoo_4017
KEGG: sfr:Sfri_3419 hypothetical protein.
       0.552
Swoo_3138
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbn:Sbal195_1599 transcriptional regulator, AraC family.
   
    0.506
Swoo_2971
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_1617 transcriptional regulator, AraC family.
   
    0.454
Swoo_4019
Hypothetical protein.
       0.444
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
     0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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