Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4023KEGG: sse:Ssed_3699 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Swoo_3870
KEGG: sse:Ssed_3933 hypothetical protein.
  
     0.624
Swoo_1574
KEGG: sse:Ssed_3108 hypothetical protein.
  
     0.532
Swoo_3331
PFAM: SEC-C motif domain protein; KEGG: sse:Ssed_1324 sec-C motif domain protein.
  
     0.529
Swoo_3907
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein.
  
     0.506
Swoo_4118
KEGG: sse:Ssed_3965 hypothetical protein.
  
     0.483
Swoo_3291
KEGG: sse:Ssed_3171 hypothetical protein.
  
     0.478
zapB
Protein of unknown function DUF904; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
     0.423
Swoo_4020
PFAM: beta-lactamase domain protein; KEGG: sbl:Sbal_1822 hypothetical protein.
       0.406
Swoo_4021
KEGG: sfr:Sfri_1848 hypothetical protein.
       0.406
Swoo_4022
KEGG: sfr:Sfri_1847 hypothetical protein.
       0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.