Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4026KEGG: gka:GK2897 hydantoin racemase. (266 aa)    
Predicted Functional Partners:
Swoo_4028
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_B5474 5-oxoprolinase (ATP-hydrolyzing).
 
   
 0.896
Swoo_4027
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: reu:Reut_B5473 5-oxoprolinase (ATP-hydrolyzing).
 
     0.890
Swoo_4029
KEGG: bja:bll5495 hypothetical protein.
 
     0.811
Swoo_4030
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor.
       0.773
Swoo_4031
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: xac:XAC3421 transcriptional regulator.
 
     0.563
Swoo_4113
PFAM: protein of unknown function DUF917; KEGG: hne:HNE_2504 hypothetical protein.
 
     0.467
Swoo_4112
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: hne:HNE_2503 hydantoinase/oxoprolinase family protein.
 
   
 0.456
Swoo_4025
KEGG: sse:Ssed_3701 hypothetical protein.
       0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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