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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4030PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor. (732 aa)    
Predicted Functional Partners:
Swoo_4026
KEGG: gka:GK2897 hydantoin racemase.
       0.773
Swoo_4027
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: reu:Reut_B5473 5-oxoprolinase (ATP-hydrolyzing).
       0.773
Swoo_4028
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_B5474 5-oxoprolinase (ATP-hydrolyzing).
       0.773
Swoo_4029
KEGG: bja:bll5495 hypothetical protein.
       0.773
Swoo_2875
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_1716 TonB-dependent receptor, plug.
  
    0.749
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
    0.715
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
  
    0.708
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
  
    0.688
Swoo_0906
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0967 TonB-dependent receptor.
  
    0.687
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
    0.680
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.