STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4031ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: xac:XAC3421 transcriptional regulator. (896 aa)    
Predicted Functional Partners:
Swoo_0757
PFAM: regulatory protein LuxR; KEGG: slo:Shew_0653 transcriptional regulator, LuxR family.
  
   
 0.592
Swoo_4030
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1722 TonB-dependent receptor.
 
     0.592
Swoo_4026
KEGG: gka:GK2897 hydantoin racemase.
 
     0.564
Swoo_4027
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: reu:Reut_B5473 5-oxoprolinase (ATP-hydrolyzing).
       0.517
Swoo_4028
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_B5474 5-oxoprolinase (ATP-hydrolyzing).
       0.509
Swoo_4032
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3702 membrane-flanked domain protein.
       0.507
Swoo_4033
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3703 membrane-flanked domain protein.
       0.507
Swoo_4029
KEGG: bja:bll5495 hypothetical protein.
       0.489
Swoo_1880
PFAM: regulatory protein LuxR; KEGG: slo:Shew_1726 transcriptional regulator, LuxR family.
  
   
 0.474
Swoo_1953
PFAM: heat shock protein Hsp20; KEGG: sse:Ssed_2668 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.