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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4032PFAM: membrane-flanked domain; KEGG: sse:Ssed_3702 membrane-flanked domain protein. (242 aa)    
Predicted Functional Partners:
Swoo_4033
PFAM: membrane-flanked domain; KEGG: sse:Ssed_3703 membrane-flanked domain protein.
 
  
 0.983
Swoo_4796
KEGG: sse:Ssed_4405 hypothetical protein.
  
    0.610
Swoo_4034
PFAM: protein of unknown function DUF924; KEGG: sse:Ssed_3704 protein of unknown function DUF924.
       0.592
Swoo_4031
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: xac:XAC3421 transcriptional regulator.
       0.507
Swoo_2299
KEGG: sse:Ssed_2311 acid phosphatase; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
  
    0.418
Swoo_2903
PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: sse:Ssed_1694 peptidase S49, N-terminal domain protein.
  
    0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.