Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4037PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0154 AMP-dependent synthetase and ligase. (558 aa)    
Predicted Functional Partners:
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
  
 0.885
Swoo_4715
PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0133 phospholipid/glycerol acyltransferase.
  
 
 0.702
Swoo_3925
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rde:RD1_4233 formate dehydrogenase, beta subunit.
    
 
 0.687
Swoo_4038
PFAM: Amidase; KEGG: vei:Veis_0353 amidase; Belongs to the amidase family.
 
 
 
 0.632
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.594
Swoo_0227
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
     0.579
Swoo_2010
Coenzyme F390 synthetase-like protein; KEGG: gsu:GSU1729 phenylacetate-CoA ligase.
 
     0.560
Swoo_2016
Coenzyme F390 synthetase-like protein; KEGG: mmz:MmarC7_1160 phenylacetate--CoA ligase.
 
     0.544
Swoo_1421
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sse:Ssed_3204 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.543
Swoo_4036
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cps:CPS_1462 hypothetical protein.
       0.513
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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