Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4039PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4358 TonB-dependent receptor. (758 aa)    
Predicted Functional Partners:
Swoo_0245
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.747
Swoo_2875
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_1716 TonB-dependent receptor, plug.
  
     0.734
Swoo_3082
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug.
  
     0.718
Swoo_3254
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1520 TonB-dependent receptor.
  
     0.710
Swoo_4894
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_4483 TonB-dependent siderophore receptor.
  
  
 0.710
Swoo_3083
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor.
  
     0.706
Swoo_3075
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.705
Swoo_1784
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2861 TonB-dependent receptor.
  
     0.695
Swoo_0516
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_0341 TonB-dependent receptor.
  
     0.667
Swoo_0906
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0967 TonB-dependent receptor.
  
     0.655
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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