STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4040KEGG: mva:Mvan_0652 regulatory protein. (357 aa)    
Predicted Functional Partners:
Swoo_3780
KEGG: sse:Ssed_3881 putative aliphatic amidase expression-regulating protein.
  
  
 
0.927
Swoo_1874
KEGG: sse:Ssed_2766 response regulator with putative antiterminator output domain-like protein.
  
 
 0.754
Swoo_4038
PFAM: Amidase; KEGG: vei:Veis_0353 amidase; Belongs to the amidase family.
 
  
 0.655
Swoo_4041
PFAM: regulatory protein MarR; KEGG: bra:BRADO0598 putative transcriptional regulatory protein, MarR family.
 
     0.636
Swoo_4644
PFAM: NMT1/THI5 like domain protein; KEGG: sse:Ssed_0291 ABC-type nitrate/sulfonate/bicarbonate transport system protein.
  
   
 0.611
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
   
  
 0.589
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
  
    0.567
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
    0.518
Swoo_0125
PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase.
   
    0.505
Swoo_1597
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.482
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.