STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4045KEGG: sde:Sde_0627 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s). (188 aa)    
Predicted Functional Partners:
Swoo_4042
KEGG: sde:Sde_0624 hypothetical protein.
 
     0.955
Swoo_4043
KEGG: sde:Sde_0625 hypothetical protein.
 
     0.951
Swoo_4044
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: sde:Sde_0626 hypothetical protein.
 
     0.938
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.646
Swoo_4630
SMART: TIR protein; KEGG: rpb:RPB_2632 TIR.
  
     0.532
Swoo_4589
PFAM: TPR repeat-containing protein; KEGG: sbl:Sbal_0349 tetratricopeptide TPR_2 repeat protein.
  
     0.520
Swoo_4046
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: gur:Gura_1217 transcription activator, effector binding.
       0.480
Swoo_1086
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.462
Swoo_3977
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: spc:Sputcn32_0845 integral membrane sensor signal transduction histidine kinase.
  
     0.449
Swoo_4047
PFAM: protein of unknown function DUF1330; KEGG: mlo:mll1854 hypothetical protein.
 
     0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.