Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4047PFAM: protein of unknown function DUF1330; KEGG: mlo:mll1854 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Swoo_0118
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pin:Ping_2106 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.609
Swoo_4048
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mlo:mlr1855 hypothetical protein.
 
     0.593
Swoo_4046
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: gur:Gura_1217 transcription activator, effector binding.
       0.485
Swoo_2444
KEGG: fjo:Fjoh_3834 hypothetical protein.
   
    0.444
Swoo_4045
KEGG: sde:Sde_0627 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s).
 
     0.435
Swoo_0291
KEGG: slo:Shew_3417 hypothetical protein.
  
     0.421
Swoo_1509
KEGG: sse:Ssed_1368 conserved hypothetical cytosolic protein.
  
     0.421
Swoo_4042
KEGG: sde:Sde_0624 hypothetical protein.
 
     0.417
Swoo_2974
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: saz:Sama_0275 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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