Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4053KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein. (114 aa)    
Predicted Functional Partners:
Swoo_4461
KEGG: shw:Sputw3181_0742 hypothetical protein.
  
     0.671
Swoo_4052
PFAM: AIG2 family protein; KEGG: cps:CPS_2442 hypothetical protein.
       0.636
Swoo_4054
KEGG: shw:Sputw3181_2554 hypothetical protein.
       0.634
Swoo_3291
KEGG: sse:Ssed_3171 hypothetical protein.
  
     0.598
Swoo_1373
PFAM: conserved hypothetical protein; KEGG: cps:CPS_0514 tryptophan-rich conserved hypothetical protein.
 
     0.588
Swoo_2391
KEGG: sse:Ssed_2233 hypothetical protein.
  
     0.521
Swoo_0817
KEGG: pin:Ping_2124 hypothetical protein.
  
     0.474
Swoo_3055
KEGG: sse:Ssed_1593 hypothetical protein.
  
     0.454
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
  
     0.421
Swoo_4023
KEGG: sse:Ssed_3699 hypothetical protein.
 
     0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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