STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4055PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sse:Ssed_3644 putative NADH-dependent flavin oxidoreductase. (350 aa)    
Predicted Functional Partners:
Swoo_0593
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sse:Ssed_4063 N-ethylmaleimide reductase, putative.
  
  
 
0.910
Swoo_2454
PFAM: nitroreductase; KEGG: spl:Spea_2510 nitroreductase.
    
 0.903
Swoo_4056
PFAM: regulatory protein TetR; KEGG: sse:Ssed_3643 transcriptional regulator, TetR family.
 
  
 0.781
Swoo_3776
KEGG: sse:Ssed_3877 succinate dehydrogenase; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
      0.500
Swoo_0723
KEGG: sse:Ssed_3837 hypothetical protein.
   
    0.444
Swoo_4054
KEGG: shw:Sputw3181_2554 hypothetical protein.
       0.434
Swoo_1317
PFAM: YceI family protein; KEGG: sse:Ssed_1217 YceI family protein; Belongs to the UPF0312 family.
     
 0.426
Swoo_2059
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family.
   
  
 0.422
Swoo_4506
PFAM: band 7 protein; KEGG: sse:Ssed_0464 band 7 protein.
   
    0.410
Swoo_1316
PFAM: cytochrome B561; KEGG: sse:Ssed_1216 cytochrome b561.
     
 0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.