Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_4057PFAM: protein of unknown function UPF0153; KEGG: ppr:PBPRA2316 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Swoo_0781
PFAM: protein of unknown function RIO1; KEGG: sse:Ssed_3802 protein of unknown function RIO1.
  
     0.575
Swoo_1599
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.515
Swoo_4058
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_3712 transcriptional regulator.
       0.513
Swoo_1439
Serine/threonine protein kinase; PFAM: leucine-rich repeat protein; Leucine-rich repeat 2 protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: spl:Spea_2938 serine/threonine protein kinase.
 
     0.491
Swoo_4056
PFAM: regulatory protein TetR; KEGG: sse:Ssed_3643 transcriptional regulator, TetR family.
       0.467
Swoo_0903
PFAM: protein of unknown function DUF1456; KEGG: sse:Ssed_3517 protein of unknown function DUF1456.
 
     0.456
Swoo_1373
PFAM: conserved hypothetical protein; KEGG: cps:CPS_0514 tryptophan-rich conserved hypothetical protein.
 
     0.456
Swoo_0818
PFAM: porin Gram-negative type; KEGG: she:Shewmr4_3228 porin, gram-negative type.
  
     0.446
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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