STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4060PFAM: UspA domain protein; KEGG: sse:Ssed_3714 universal stress protein family. (143 aa)    
Predicted Functional Partners:
Swoo_4059
PFAM: UspA domain protein; KEGG: sse:Ssed_3713 UspA domain protein.
 
   
0.982
Swoo_2063
KEGG: sse:Ssed_2602 hypothetical protein.
  
    0.483
Swoo_4005
TIGRFAM: TonB family protein; KEGG: spl:Spea_3328 TonB family protein.
  
   
 0.469
Swoo_1744
methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
    0.428
Swoo_4827
TIGRFAM: M6 family metalloprotease domain protein; PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: sse:Ssed_4432 peptidase M6, immune inhibitor A.
   
    0.414
Swoo_1000
TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sse:Ssed_0949 Dyp-type peroxidase family.
   
    0.412
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
   
    0.412
deoA
Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
   
    0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.