STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4061KEGG: sbn:Sbal195_3516 putative lipoprotein. (155 aa)    
Predicted Functional Partners:
Swoo_4063
KEGG: sbn:Sbal195_3518 hypothetical protein.
 
     0.908
Swoo_4062
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_0904 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
     0.723
Swoo_1427
KEGG: cps:CPS_3134 hypothetical protein.
  
     0.647
Swoo_3360
PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3025 hypothetical protein.
  
     0.620
Swoo_2256
KEGG: cps:CPS_1889 hypothetical protein; Belongs to the bacterial solute-binding protein 3 family.
  
     0.550
Swoo_2790
KEGG: sse:Ssed_1803 hypothetical protein.
  
     0.549
Swoo_2937
KEGG: cps:CPS_3046 hypothetical protein.
  
     0.503
Swoo_2246
KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
     0.485
Swoo_4285
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_3863 transcriptional regulator, LysR family.
  
     0.483
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
  
     0.476
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.