Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_4062PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_0904 protein of unknown function DUF692; Belongs to the UPF0276 family. (305 aa)    
Predicted Functional Partners:
Swoo_4063
KEGG: sbn:Sbal195_3518 hypothetical protein.
 
  
 0.972
Swoo_4774
KEGG: sse:Ssed_4383 hypothetical protein.
 
  
 0.924
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
 
  
 0.897
Swoo_1789
KEGG: sse:Ssed_2856 hypothetical protein.
 
  
 0.758
Swoo_4061
KEGG: sbn:Sbal195_3516 putative lipoprotein.
 
   
 0.734
Swoo_1890
PFAM: DoxX family protein; KEGG: sse:Ssed_2748 DoxX family protein.
 
  
 0.621
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
   
    0.571
Swoo_0491
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: sbn:Sbal195_4098 outer membrane adhesin like proteiin.
  
    0.513
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
  
 0.485
Swoo_0748
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: slo:Shew_0644 FHA domain containing protein.
   
    0.442
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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