STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4063KEGG: sbn:Sbal195_3518 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Swoo_4062
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_0904 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
  
 0.972
Swoo_4061
KEGG: sbn:Sbal195_3516 putative lipoprotein.
 
   
 0.929
Swoo_4775
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sse:Ssed_4384 hypothetical protein.
 
  
 0.860
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
 
  
 0.850
Swoo_1788
PFAM: protein of unknown function DUF692; KEGG: sse:Ssed_2857 protein of unknown function DUF692; Belongs to the UPF0276 family.
 
  
 0.747
Swoo_4774
KEGG: sse:Ssed_4383 hypothetical protein.
  
   
 0.689
Swoo_1890
PFAM: DoxX family protein; KEGG: sse:Ssed_2748 DoxX family protein.
  
  
 0.513
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
  
 0.447
Swoo_4064
PFAM: Aldehyde Dehydrogenase; KEGG: sse:Ssed_3716 coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.