STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4068Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase. (463 aa)    
Predicted Functional Partners:
Swoo_4069
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sse:Ssed_3719 two component, sigma54 specific, transcriptional regulator, fis family.
 
 
 0.887
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
 
     0.833
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
     0.772
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
     0.698
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
 
     0.639
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sse:Ssed_3067 flagellar hook-basal body complex subunit FliE.
  
 
 0.599
Swoo_1618
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.582
Swoo_1633
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: sse:Ssed_3051 GTP-binding signal recognition particle SRP54, G-domain.
   
  
 0.546
Swoo_2293
PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_2317 protein of unknown function DUF885.
  
     0.491
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.489
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.