Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4068Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase. (463 aa)    
Predicted Functional Partners:
Swoo_4069
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sse:Ssed_3719 two component, sigma54 specific, transcriptional regulator, fis family.
 
 
 0.882
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
 
     0.846
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
     0.809
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
     0.743
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
 
     0.645
Swoo_2293
PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_2317 protein of unknown function DUF885.
  
     0.491
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.489
Swoo_4208
KEGG: sse:Ssed_0761 hypothetical protein.
  
     0.484
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.474
Swoo_3877
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.460
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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