Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_4070PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214. (404 aa)    
Predicted Functional Partners:
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
 
 
 0.957
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
     0.947
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
 
    0.899
Swoo_4849
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAa2827 ABC transporter ATP-binding protein.
 
 
 0.859
Swoo_1899
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2740 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.851
Swoo_2021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_0819 ABC transporter related.
 
 
 0.745
Swoo_4068
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase.
 
     0.743
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
 
 
 0.681
Swoo_1902
KEGG: sse:Ssed_2737 membrane-fusion protein.
 
   0.675
Swoo_2020
PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_1756 acriflavin resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.675
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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