STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4072PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related. (253 aa)    
Predicted Functional Partners:
Swoo_4848
PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa2828 ABC transporter permease protein.
 
 0.980
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
 
 0.971
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
 
 0.960
Swoo_1903
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_2736 ABC transporter permease protein.
 
 0.954
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
 
 
 0.793
Swoo_2023
PFAM: protein of unknown function DUF214; KEGG: mmr:Mmar10_0817 protein of unknown function DUF214.
 
 
 0.778
Swoo_1430
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3196 hypothetical protein.
 
 
 0.697
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
     0.659
Swoo_4068
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase.
 
     0.639
Swoo_2022
PFAM: protein of unknown function DUF214; KEGG: sde:Sde_1758 putative ABC transport system permease protein.
 
 0.636
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.