Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4074TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit. (420 aa)    
Predicted Functional Partners:
Swoo_4071
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3721 protein of unknown function DUF214.
 
  
 0.941
Swoo_4070
PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3720 protein of unknown function DUF214.
 
    0.899
Swoo_4068
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3718 integral membrane sensor signal transduction histidine kinase.
 
     0.846
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
 
  
 0.772
Swoo_4073
KEGG: sse:Ssed_3723 hypothetical protein.
       0.768
Swoo_3729
KEGG: sse:Ssed_3506 hypothetical protein.
  
    0.688
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
    0.625
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.622
Swoo_4159
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.568
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.560
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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