Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_4078KEGG: sse:Ssed_3728 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.562
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
 
     0.447
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
 
     0.445
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.436
Swoo_4022
KEGG: sfr:Sfri_1847 hypothetical protein.
  
     0.430
Swoo_4079
PFAM: periplasmic binding protein; KEGG: spl:Spea_3374 periplasmic binding protein.
       0.430
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
  
     0.423
Swoo_4074
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_3724 efflux transporter, RND family, MFP subunit.
 
    0.419
Swoo_4076
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sse:Ssed_3726 protein of unknown function DUF395, YeeE/YedE.
       0.404
Swoo_4077
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_3727 NADH dehydrogenase.
       0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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