STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4079PFAM: periplasmic binding protein; KEGG: spl:Spea_3374 periplasmic binding protein. (276 aa)    
Predicted Functional Partners:
Swoo_4085
PFAM: transport system permease protein; KEGG: sse:Ssed_3735 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.984
Swoo_4009
PFAM: transport system permease protein; KEGG: spl:Spea_3332 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.983
Swoo_4010
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_3333 ABC transporter related.
 
 
 0.977
Swoo_4086
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3736 ABC transporter-related protein.
 
 
 0.975
Swoo_4008
PFAM: periplasmic binding protein; KEGG: spl:Spea_3331 periplasmic binding protein.
  
  
 0.787
Swoo_4002
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: spl:Spea_3325 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
    0.701
Swoo_1214
PFAM: protein of unknown function UPF0126; KEGG: sse:Ssed_1112 protein of unknown function UPF0126.
     
 0.651
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG.
      
 0.631
Swoo_0996
PFAM: extracellular solute-binding protein family 1; KEGG: spl:Spea_0844 extracellular solute-binding protein family 1.
  
  
 0.622
Swoo_4088
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.555
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.